What autoimmune diseases can cause elevated liver enzymes
What autoimmune diseases can cause elevated liver enzymes Autoimmune diseases are conditions where the immune system, which normally protects the body from infections, mistakenly attacks its own tissues. This misguided immune response can affect various organs, including the liver. Elevated liver enzymes are often an indicator of liver inflammation or damage, and certain autoimmune diseases are known to cause such elevations.
One of the most well-known autoimmune conditions impacting the liver is autoimmune hepatitis. In this disease, the body’s immune system targets liver cells, leading to inflammation, fibrosis, and potentially cirrhosis if left untreated. Patients often present with elevated levels of liver enzymes—particularly alanine aminotransferase (ALT) and aspartate aminotransferase (AST)—alongside symptoms like fatigue, jaundice, and abdominal discomfort. Autoimmune hepatitis can occur alone or alongside other autoimmune disorders, reflecting the systemic nature of immune dysregulation.
Primary biliary cholangitis (PBC), formerly known as primary biliary cirrhosis, is another autoimmune disease affecting the liver. It primarily involves destruction of the small bile ducts within the liver. As bile flow becomes obstructed, liver cells sustain damage, leading to increased liver enzyme levels, especially alkaline phosphatase (ALP) and gamma-glutamyl transferase (GGT). Patients may experience pruritus (itching), fatigue, and, in advanced stages, signs of cirrhosis. PBC predominantly affects middle-aged women and requires immunosuppressive therapy to slow disease progression.
Primary sclerosing cholangitis (PSC) is a chronic autoimmune disorder characterized by inflammation and fibrosis of both intra- and extrahepatic bile ducts. Like PBC, PSC results in cholestasis—impaired bile flow—and elevated ALP and GGT levels. This condition is frequently associated with inflammatory bowel diseases such as ulcerative colitis. While the exact cause remains unknown, immune-mediated processes play a significant role. Symptoms can include fatigue, abdominal pain, and jaundice, and there is an increased risk for developing cholangiocarcinoma, a bile duct cancer.
Systemic autoimmune diseases, such as systemic lupus erythematosus (SLE) and rheumatoid arthritis, can also involve the liver, often causing transient or mild elevations in liver enzymes. In SLE, immune complexes and inflammation can target hepatic tissue, leading to hepatit

is-like features. Similarly, medications used to treat autoimmune diseases, including methotrexate and azathioprine, can cause drug-induced liver injury, complicating the clinical picture.
In addition, autoimmune diseases like Sjögren’s syndrome and scleroderma may have secondary effects on the liver, either directly through immune mechanisms or indirectly via medication toxicity or secondary liver conditions. Recognizing the link between autoimmune diseases and elevated liver enzymes is important for appropriate diagnosis and management.
In clinical practice, when elevated liver enzymes are detected, physicians consider autoimmune disease as part of the differential diagnosis, especially if the patient exhibits symptoms like fatigue, jaundice, or abnormal bile duct imaging. Blood tests for specific autoantibodies—such as antinuclear antibodies (ANA), anti-mitochondrial antibodies (AMA), and smooth muscle antibodies—aid in confirming autoimmune etiologies. Liver biopsy remains a valuable tool in establishing the diagnosis and assessing the extent of liver damage.
Understanding the connection between autoimmune diseases and elevated liver enzymes underscores the importance of comprehensive evaluation in patients with abnormal liver function tests. Early diagnosis and appropriate immunosuppressive therapy can prevent progression to cirrhosis and liver failure, improving patient outcomes and quality of life.








